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1

Proteolytic systems of lactic acid bacteria

Kirsi Savijoki, Hanne Ingmer, Pekka Varmanen

Journal:

Applied Microbiology and Biotechnology

Year:

2006

Language:

english

File:

PDF, 262 KB

english, 2006

2

Vancomycin resistance factor of Lactobacillus rhamnosus GG in relation to enterococcal vancomycin resistance (van) genes

Soile Tynkkynen, Kavindra V Singh, Pekka Varmanen

Journal:

International Journal of Food Microbiology

Year:

1998

Language:

english

File:

PDF, 529 KB

english, 1998

3

Growth phase-associated changes in the proteome and transcriptome of Lactobacillus rhamnosus GG in industrial-type whey medium

Kati Laakso, Kerttu Koskenniemi, Johanna Koponen, Matti Kankainen, Anu Surakka, Tuomas Salusjärvi, Petri Auvinen, Kirsi Savijoki, Tuula A. Nyman, Nisse Kalkkinen, Soile Tynkkynen, Pekka Varmanen

Journal:

Microbial Biotechnology

Year:

2011

Language:

english

File:

PDF, 1.29 MB

english, 2011

4

Effect of heat-shock and bile salts on protein synthesis of Bifidobacterium longum revealed by [35S]methionine labelling and two-dimensional gel electrophoresis

Kirsi Savijoki, Aki Suokko, Airi Palva, Leena Valmu, Nisse Kalkkinen, Pekka Varmanen

Journal:

FEMS Microbiology Letters

Year:

2005

Language:

english

File:

PDF, 324 KB

english, 2005

5

Inactivation of a gene that is highly conserved in Gram-positive bacteria stimulates degradation of non-native proteins and concomitantly increases stress tolerance in Lactococcus lactis

Dorte Frees, Pekka Varmanen, Hanne Ingmer

Journal:

Molecular Microbiology

Year:

2001

Language:

english

File:

PDF, 591 KB

english, 2001

6

Heat and DNA damage induction of the LexA-like regulator HdiR from Lactococcus lactis is mediated by RecA and ClpP

Kirsi Savijoki, Hanne Ingmer, Dorte Frees, Finn K. Vogensen, Airi Palva, Pekka Varmanen

Journal:

Molecular Microbiology

Year:

2003

Language:

english

File:

PDF, 356 KB

english, 2003

7

ClpL is essential for induction of thermotolerance and is potentially part of the HrcA regulon in Lactobacillus gasseri

Aki Suokko, Marjo Poutanen, Kirsi Savijoki, Nisse Kalkkinen, Pekka Varmanen

Journal:

Year:

2008

Language:

english

File:

PDF, 496 KB

english, 2008

8

Clp ATPases and ClpP proteolytic complexes regulate vital biological processes in low GC, Gram-positive bacteria

Dorte Frees, Kirsi Savijoki, Pekka Varmanen, Hanne Ingmer

Journal:

Molecular Microbiology

Year:

2007

Language:

english

File:

PDF, 275 KB

english, 2007

9

Lactobacillus plantarum for oral peptide delivery

Y. Oh, P. Varmanen, X. Y. Han, G. Bennett, Z. Xu, T. Lu, A. Palva

Journal:

Molecular Oral Microbiology

Year:

2007

Language:

english

File:

PDF, 555 KB

english, 2007

10

Ciprofloxacin induces mutagenesis to antibiotic resistance independent of UmuC in Streptococcus uberis

Emilia Varhimo, Kirsi Savijoki, Hanna Jefremoff, Jari Jalava, Antti Sukura, Pekka Varmanen

Journal:

Environmental Microbiology

Year:

2008

Language:

english

File:

PDF, 112 KB

english, 2008

11

New convenient defined media for [35S]methionine labelling and proteomic analyses of probiotic lactobacilli

K. Savijoki, A. Suokko, A. Palva, P. Varmanen

Journal:

Letters in Applied Microbiology

Year:

2006

Language:

english

File:

PDF, 595 KB

english, 2006

12

Characterization and expression of the pepN gene encoding a general aminopeptidase from Lactobacillus helveticus

Pekka Varmanen, Erkki Vesanto, James L. Steele, Airi Palva

Journal:

FEMS Microbiology Letters

Year:

1994

Language:

english

File:

PDF, 503 KB

english, 1994

13

Effect of acid stress on protein expression and phosphorylation in Lactobacillus rhamnosus GG

Johanna Koponen, Kati Laakso, Kerttu Koskenniemi, Matti Kankainen, Kirsi Savijoki, Tuula A. Nyman, Willem M. de Vos, Soile Tynkkynen, Nisse Kalkkinen, Pekka Varmanen

Journal:

Journal of Proteomics

Year:

2012

Language:

english

File:

PDF, 1.40 MB

english, 2012

14

Alpha- and β-casein components of host milk induce biofilm formation in the mastitis bacterium Streptococcus uberis

Emilia Varhimo, Pekka Varmanen, Adyary Fallarero, Malena Skogman, Satu Pyörälä, Antti Iivanainen, Antti Sukura, Pia Vuorela, Kirsi Savijoki

Journal:

Veterinary Microbiology

Year:

2011

Language:

english

File:

PDF, 607 KB

english, 2011

15

Comparative analysis of excretory-secretory antigens ofTrichinella spiralisandTrichinella britovimuscle larvae by two-dimensional difference gel electrophoresis and immunoblotting

Justyna Bien, Anu Näreaho, Pekka Varmanen, Katarzyna Gozdzik, Bozena Moskwa, Wladyslaw Cabaj, Tuula A Nyman, Kirsi Savijoki

Journal:

Proteome Science

Year:

2012

Language:

english

File:

PDF, 601 KB

english, 2012

16

Characterization and Expression of the Lactobacillus helveticus pepC Gene Encoding a General Aminopeptidase

Erkki Vesanto, Pekka Varmanen, James L. Steele, Airi Palva

Journal:

Year:

1994

Language:

english

File:

PDF, 919 KB

english, 1994

17

New Insights into Staphylococcus aureus Stress Tolerance and Virulence Regulation from an Analysis of the Role of the ClpP Protease in the Strains Newman, COL, and SA564

Frees, Dorte, Andersen, Julie Hove, Hemmingsen, Lene, Koskenniemi, Kerttu, Bæk, Kristoffer T., Muhammed, Musemma Kedir, Gudeta, Dereje Dadi, Nyman, Tuula A., Sukura, Antti, Varmanen, Pekka, Savijoki,

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 3.00 MB

english, 2012

18

Comparative Proteome Cataloging of Lactobacillus rhamnosus Strains GG and Lc705

Savijoki, Kirsi, Lietzén, Niina, Kankainen, Matti, Alatossava, Tapani, Koskenniemi, Kerttu, Varmanen, Pekka, Nyman, Tuula A.

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 2.50 MB

english, 2011

19

Comparative Exoprotein Profiling of Different Staphylococcus epidermidis Strains Reveals Potential Link between Nonclassical Protein Export and Virulence

Siljamäki, Pia, Varmanen, Pekka, Kankainen, Matti, Sukura, Antti, Savijoki, Kirsi, Nyman, Tuula A.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.48 MB

english, 2014

20

Two-Dimensional Difference Gel Electrophoresis Analysis of Streptococcus uberis in Response to Mutagenesis-Inducing Ciprofloxacin Challenge

Poutanen, Marjo, Varhimo, Emilia, Kalkkinen, Nisse, Sukura, Antti, Varmanen, Pekka, Savijoki, Kirsi

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 4.44 MB

english, 2009

21

Proteome Analysis of Lactobacillus rhamnosus GG Using 2-D DIGE and Mass Spectrometry Shows Differential Protein Production in Laboratory and Industrial-Type Growth Media

Koskenniemi, Kerttu, Koponen, Johanna, Kankainen, Matti, Savijoki, Kirsi, Tynkkynen, Soile, de Vos, Willem M., Kalkkinen, Nisse, Varmanen, Pekka

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 1.58 MB

english, 2009

22

Comparative proteome profiling of bovine and human Staphylococcus epidermidis strains for screening specifically expressed virulence and adaptation proteins

Siljamäki, Pia, Varmanen, Pekka, Kankainen, Matti, Pyörälä, Satu, Karonen, Taru, Iivanainen, Antti, Auvinen, Petri, Paulin, Lars, Laine, Pia K., Taponen, Suvi, Simojoki, Heli, Sukura, Antti, Nyman, Tu

Journal:

Year:

2014

Language:

english

File:

PDF, 425 KB

english, 2014

23

Uncovering Surface-Exposed Antigens of Lactobacillus rhamnosus by Cell Shaving Proteomics and Two-Dimensional Immunoblotting

Espino, Eva, Koskenniemi, Kerttu, Mato-Rodriguez, Lourdes, Nyman, Tuula A., Reunanen, Justus, Koponen, Johanna, Öhman, Tiina, Siljamäki, Pia, Alatossava, Tapani, Varmanen, Pekka, Savijoki, Kirsi

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 7.22 MB

english, 2015

24

An operon from Lactobacillus helveticus composed of a proline iminopeptidase gene (pepl) and two genes coding for putative members of the ABC transporter family of proteins

Varmanen, P., Rantanen, T., Palva, A.

Journal:

Microbiology (Society for General Microbiology)

Year:

1996

Language:

english

File:

PDF, 1.50 MB

english, 1996

25

Characterization of a prolinase gene and its product and an adjacent ABC transporter gene from Lactobacillus helveticus

Varmanen, P., Steele, J., Palva, A.

Journal:

Microbiology (Society for General Microbiology)

Year:

1996

Language:

english

File:

PDF, 1.29 MB

english, 1996

26

Identification of a Novel Streptococcal Gene Cassette Mediating SOS Mutagenesis in Streptococcus uberis

Varhimo, E., Savijoki, K., Jalava, J., Kuipers, O. P., Varmanen, P.

Journal:

Journal of Bacteriology

Year:

2007

Language:

english

File:

PDF, 543 KB

english, 2007

27

Proteomics and Transcriptomics Characterization of Bile Stress Response in Probiotic Lactobacillus rhamnosus GG

Koskenniemi, K., Laakso, K., Koponen, J., Kankainen, M., Greco, D., Auvinen, P., Savijoki, K., Nyman, T. A., Surakka, A., Salusjarvi, T., de Vos, W. M., Tynkkynen, S., Kalkkinen, N., Varmanen, P.

Journal:

Molecular & Cellular Proteomics

Year:

2011

Language:

english

File:

PDF, 2.01 MB

english, 2011

28

Characterization of a Mobile clpL Gene from Lactobacillus rhamnosus

Suokko, A., Savijoki, K., Malinen, E., Palva, A., Varmanen, P.

Journal:

Applied and Environmental Microbiology

Year:

2005

Language:

english

File:

PDF, 294 KB

english, 2005

29

X-Prolyl Dipeptidyl Aminopeptidase Gene (pepX) Is Part of the glnRA Operon in Lactobacillus rhamnosus

Varmanen, P., Savijoki, K., Avall, S., Palva, A., Tynkkynen, S.

Journal:

Journal of Bacteriology

Year:

2000

Language:

english

File:

PDF, 875 KB

english, 2000

30

ClpE from Lactococcus lactis Promotes Repression of CtsR-Dependent Gene Expression

Varmanen, P., Vogensen, F. K., Hammer, K., Palva, A., Ingmer, H.

Journal:

Journal of Bacteriology

Year:

2003

Language:

english

File:

PDF, 864 KB

english, 2003

31

A Streptococcus uberis transposon mutant screen reveals a negative role for LiaR homologue in biofilm formation

Salomäki, T., Karonen, T., Siljamäki, P., Savijoki, K., Nyman, T.A., Varmanen, P., Iivanainen, A.

Journal:

Journal of Applied Microbiology

Year:

2015

Language:

english

File:

PDF, 406 KB

english, 2015

32

Complete genome sequence ofPropionibacterium freudenreichiiDSM 20271T

Koskinen, Patrik, Deptula, Paulina, Smolander, Olli-Pekka, Tamene, Fitsum, Kammonen, Juhana, Savijoki, Kirsi, Paulin, Lars, Piironen, Vieno, Auvinen, Petri, Varmanen, Pekka

Journal:

Standards in Genomic Sciences

Year:

2015

Language:

english

File:

PDF, 1.36 MB

english, 2015

33

Penicillin G increases the synthesis of a suicidal marker (CidC) and virulence (HlgBC) proteins in Staphylococcus aureus biofilm cells

Savijoki, Kirsi, Skogman, Malena, Fallarero, Adyary, Nyman, Tuula A., Sukura, Antti, Vuorela, Pia, Varmanen, Pekka

Journal:

International Journal of Medical Microbiology

Year:

2015

Language:

english

File:

PDF, 1.23 MB

english, 2015

34

Characterization and expression of the pepN gene encoding a general aminopeptidase from Lactobacillus helveticus

Journal:

FEMS Microbiology Letters

Year:

1994

Language:

english

File:

PDF, 490 KB

english, 1994

35

Letter to the editor on ‘Enhancing vitamin B12 content in soy-yogurt by Lactobacillus reuteri, IJFM. 206:56–59’

Varmanen, Pekka, Deptula, Paulina, Chamlagain, Bhawani, Piironen, Vieno

Journal:

International Journal of Food Microbiology

Year:

2016

Language:

english

File:

PDF, 384 KB

english, 2016

36

Effect of the lower ligand precursors on vitamin B12 production by food-grade propionibacteria

Chamlagain, Bhawani, Deptula, Paulina, Edelmann, Minnamari, Kariluoto, Susanna, Grattepanche, Franck, Lacroix, Christophe, Varmanen, Pekka, Piironen, Vieno

Journal:

Lebensmittel-Wissenschaft und-Technologie / Food Science and Technology

Year:

2016

Language:

english

File:

PDF, 600 KB

english, 2016

37

BluB/CobT2 fusion enzyme activity reveals mechanisms responsible for production of active form of vitamin B12byPropionibacterium freudenreichii

Deptula, Paulina, Kylli, Petri, Chamlagain, Bhawani, Holm, Liisa, Kostiainen, Risto, Piironen, Vieno, Savijoki, Kirsi, Varmanen, Pekka

Journal:

Microbial Cell Factories

Year:

2015

Language:

english

File:

PDF, 1.43 MB

english, 2015

38

The Cell Wall Polymer Lipoteichoic Acid Becomes Nonessential in Staphylococcus aureus Cells Lacking the ClpX Chaperone

Bæk, Kristoffer T., Bowman, Lisa, Millership, Charlotte, Dupont Søgaard, Mia, Kaever, Volkhard, Siljamäki, Pia, Savijoki, Kirsi, Varmanen, Pekka, Nyman, Tuula A., Gründling, Angelika, Frees, Dorte

Journal:

Year:

2016

Language:

english

File:

PDF, 1.68 MB

english, 2016

39

Aspergillus flavusgrowth inhibition by Lactobacillus strains isolated from traditional fermented Kenyan milk and maize products

Ahlberg, Sara, Joutsjoki, Vesa, Laurikkala, Sini, Varmanen, Pekka, Korhonen, Hannu

Journal:

Archives of Microbiology

Year:

2017

Language:

english

File:

PDF, 643 KB

english, 2017

40

In situ production of active vitamin B12 in cereal matrices using Propionibacterium freudenreichii

Chamlagain, Bhawani, Sugito, Tessa A., Deptula, Paulina, Edelmann, Minnamari, Kariluoto, Susanna, Varmanen, Pekka, Piironen, Vieno

Journal:

Food Science & Nutrition

Year:

2017

Language:

english

File:

PDF, 695 KB

english, 2017

41

Secretome profiling of Propionibacterium freudenreichii reveals highly variable responses even among the closely related strains

Frohnmeyer, Esther, Deptula, Paulina, Nyman, Tuula A., Laine, Pia K. S., Vihinen, Helena, Paulin, Lars, Auvinen, Petri, Jokitalo, Eija, Piironen, Vieno, Varmanen, Pekka, Savijoki, Kirsi

Journal:

Microbial Biotechnology

Year:

2018

Language:

english

File:

PDF, 1.17 MB

english, 2018

42

In situ fortification of vitamin B12 in wheat flour and wheat bran by fermentation with Propionibacterium freudenreichii

Xie, Chong, Coda, Rossana, Chamlagain, Bhawani, Edelmann, Minnamari, Deptula, Paulina, Varmanen, Pekka, Piironen, Vieno, Katina, Kati

Journal:

Journal of Cereal Science

Year:

2018

Language:

english

File:

PDF, 1.62 MB

english, 2018

43

Food-Like Growth Conditions Support Production of Active Vitamin B12 by Propionibacterium freudenreichii 2067 without DMBI, the Lower Ligand Base, or Cobalt Supplementation

Deptula, Paulina, Chamlagain, Bhawani, Edelmann, Minnamari, Sangsuwan, Panchanit, Nyman, Tuula A., Savijoki, Kirsi, Piironen, Vieno, Varmanen, Pekka

Journal:

Frontiers in Microbiology

Year:

2017

Language:

english

File:

PDF, 1.32 MB

english, 2017

44

De novo assembly of genomes from long sequence reads reveals uncharted territories of Propionibacterium freudenreichii

Deptula, Paulina, Laine, Pia K., Roberts, Richard J., Smolander, Olli-Pekka, Vihinen, Helena, Piironen, Vieno, Paulin, Lars, Jokitalo, Eija, Savijoki, Kirsi, Auvinen, Petri, Varmanen, Pekka

Journal:

Year:

2017

Language:

english

File:

PDF, 3.74 MB

english, 2017

45

Growth Mode and Carbon Source Impact the Surfaceome Dynamics of Lactobacillus rhamnosus GG

Savijoki, Kirsi, Nyman, Tuula A., Kainulainen, Veera, Miettinen, Ilkka, Siljamäki, Pia, Fallarero, Adyary, Sandholm, Jouko, Satokari, Reetta, Varmanen, Pekka

Journal:

Frontiers in Microbiology

Year:

2019

Language:

english

File:

PDF, 5.36 MB

english, 2019

46

Co-fermentation of Propionibacterium freudenreichii and Lactobacillus brevis in Wheat Bran for in situ Production of Vitamin B12

Xie, Chong, Coda, Rossana, Chamlagain, Bhawani, Varmanen, Pekka, Piironen, Vieno, Katina, Kati

Journal:

Frontiers in Microbiology

Year:

2019

Language:

english

File:

PDF, 3.53 MB

english, 2019

47

Red-Brown Pigmentation of Acidipropionibacterium jensenii Is Tied to Haemolytic Activity and cyl-Like Gene Cluster

Deptula, Paulina, Loivamaa, Iida, Smolander, Olli-Pekka, Laine, Pia, Roberts, Richard J., Piironen, Vieno, Paulin, Lars, Savijoki, Kirsi, Auvinen, Petri, Varmanen, Pekka

Journal:

Year:

2019

Language:

english

File:

PDF, 2.34 MB

english, 2019

48

Red-Brown Pigmentation of Acidipropionibacterium jensenii Is Tied to Haemolytic Activity and cyl-Like Gene Cluster

Deptula, Paulina, Loivamaa, Iida, Smolander, Olli-Pekka, Laine, Pia, Roberts, Richard J., Piironen, Vieno, Paulin, Lars, Savijoki, Kirsi, Auvinen, Petri, Varmanen, Pekka

Journal:

Year:

2019

File:

PDF, 2.34 MB

2019

49

Growth Mode and Physiological State of Cells Prior to Biofilm Formation Affect Immune Evasion and Persistence of Staphylococcus aureus

Savijoki, Kirsi, Miettinen, Ilkka, Nyman, Tuula A., Kortesoja, Maarit, Hanski, Leena, Varmanen, Pekka, Fallarero, Adyary

Journal:

Year:

2020

File:

PDF, 3.32 MB

2020

50

Metatranscriptomic assessment of burn wound infection clearance

Ojala, Teija, Lindford, Andrew, Savijoki, Kirsi, Lagus, Heli, Tommila, Jenni, Medlar, Alan, Kuusela, Pentti, Varmanen, Pekka, Holm, Liisa, Vuola, Jyrki, Kankuri, Esko, Kankainen, Matti

Journal:

Clinical Microbiology and Infection

Year:

2020

File:

PDF, 942 KB

2020

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